rs51416494 SNP Detail

Summary

• ID
  rs51416494
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:91633888 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCATACCTC CCAAAGCCAA
  GTGTGAGAGC GATGTCCACA TTACATCACA AAAGCCCAAT GGCATCAGGT GGCTAAACCC
  CCAGAATCTG GAAGGCAGAC TTAGAAAGTC ACCACTGGGA AAGTCACTGT GAACTCCAAA
  CCTGCTCTTT AGAGGTTGGT AGCCCTGCAA GCAGAGTTAA GTCCTGATCT ACAACTTGGT
  Y
  ACAGTACACA TTGGCATGCT CGGCCAAGGA GACGTTAGAG AAGAGCCCGT CTCAACCTCA
  CTGTTACGAG AGTATCAGCC AGGAAATCAA CAGAAATCAA CAGTGATTTG CCAGCTTTGA
  GATGTCCTGC TCAACCGAAT AGGGCTTGAG CCCTAACCTC TGGCACAGCC CTGCGGACTG
  AGCAGCAGCT GTCTGAATCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss61672043	NES17617428	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs51416494					SNP	T	T	T	T	T	T	T	T	T	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61672043	NES17617428	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:91633888 () rs orientation: forward

Symbol	Name	Function Class
Gm51993	predicted gene, 51993	within coordinates
Gm59627	predicted gene, 59627	within coordinates
Rr470642	regulatory region 470642	535 bp proximal
Rr470643	regulatory region 470643	764 bp proximal
Rr470644	regulatory region 470644	1175 bp proximal
Ston2	stonin 2	within coordinates
Tssr114594	transcription start site region 114594	97 bp downstream
Tssr114595	transcription start site region 114595	1670 bp upstream