rs51416863 SNP Detail

Summary

• ID
  rs51416863
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:38937715 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A ACTAACCAGA GCATTGCTTA AATAATTTGT GGCAATCCTT
  TCTTGGAATT TTCCAAACAA GTATTTTTGG GCTGAATGTG ACCCATTTTT TTGCATTGCC
  T
  TTTTTTTTTT TATTAAAGCG AAGACTATAC ACTTATTTCA CAGATTAAAC ACTCCATTCT
  ACAGAATGAA TTCAATTACC TGTTTTCTCA ACTTAAATTC A                    
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss134846101	ENSMUSSNP3863450	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs51416863					SNP	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:38937715 () rs orientation: forward

Symbol	Name	Function Class
C230034O21Rik	RIKEN cDNA C230034O21 gene	within coordinates
Cpgi13105	CpG island 13105	1416 bp proximal
Gm65329	predicted gene, 65329	1100 bp downstream
Rr575715	regulatory region 575715	249 bp distal
Rr575716	regulatory region 575716	541 bp distal
Rr575717	regulatory region 575717	44 bp proximal
Rr575718	regulatory region 575718	907 bp proximal
Rr575719	regulatory region 575719	1970 bp proximal
Tssr28930	transcription start site region 28930	1746 bp upstream