rs51416906 SNP Detail

Summary

• ID
  rs51416906
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:118597113 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C ATTGGCAGAG CATCAACTGT GGGCTTCACC TAACCACATA
  AGCAAGACTC ATACAGGAAG AGGCAGAAAA ACAATGGTGG CCCACCCCCA CTGCCGTGTG
  C
  GTGTGCGTGT GTGTGTGTGT GTGTGTGTCT GTGTGTGTTG AAACAGGCTT TCCCTGACTT
  TCCTGGAACT CACTCTGTAG ACCAGGCTGC CCTGGAACTC A                    
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147312099	ENSMUSSNP7169542	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs51416906					SNP	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118597113 () rs orientation: forward

Symbol	Name	Function Class
Rr397216	regulatory region 397216	1723 bp downstream
Rr563327	regulatory region 563327	1696 bp distal
Rr563328	regulatory region 563328	1936 bp distal
Rr563329	regulatory region 563329	966 bp distal
Rr563330	regulatory region 563330	within coordinates
Rr563331	regulatory region 563331	199 bp proximal