rs51417421 SNP Detail

Summary

• ID
  rs51417421
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:48040950 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCAC AGACTGAGGA GGGCTGGCAC
  W
  CCCTAGGCTT GAGGGCACGA AGTGC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss145708987	ENSMUSSNP5822804	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T	T
ss325406549	CHEV_17_47866974	CHEVERUD	SCREENING_POP	f	SNP				A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs51417421					SNP	A	T	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:48040950 () rs orientation: forward

Symbol	Name	Function Class
Pgc	progastricsin (pepsinogen C)	within coordinates
Rr528106	regulatory region 528106	684 bp proximal
Tssr5147	transcription start site region 5147	1274 bp downstream
Tssr5148	transcription start site region 5148	712 bp upstream
Tssr5149	transcription start site region 5149	1458 bp upstream
Tssr145004	transcription start site region 145004	1283 bp downstream
Tssr145005	transcription start site region 145005	1262 bp downstream
Tssr145006	transcription start site region 145006	1233 bp downstream
Tssr145007	transcription start site region 145007	1201 bp downstream
Tssr145008	transcription start site region 145008	1180 bp downstream
Tssr145009	transcription start site region 145009	1152 bp downstream
Tssr145010	transcription start site region 145010	770 bp downstream
Tssr145011	transcription start site region 145011	751 bp downstream
Tssr145012	transcription start site region 145012	734 bp downstream
Tssr145013	transcription start site region 145013	682 bp downstream
Tssr145014	transcription start site region 145014	55 bp upstream
Tssr145015	transcription start site region 145015	117 bp upstream
Tssr145016	transcription start site region 145016	128 bp upstream
Tssr145017	transcription start site region 145017	573 bp upstream
Tssr145018	transcription start site region 145018	585 bp upstream
Tssr145019	transcription start site region 145019	616 bp upstream
Tssr145020	transcription start site region 145020	637 bp upstream
Tssr145021	transcription start site region 145021	663 bp upstream
Tssr145022	transcription start site region 145022	695 bp upstream
Tssr145023	transcription start site region 145023	722 bp upstream
Tssr145024	transcription start site region 145024	833 bp upstream
Tssr145025	transcription start site region 145025	1177 bp upstream
Tssr145026	transcription start site region 145026	1433 bp upstream
Tssr148459	transcription start site region 148459	1224 bp upstream
Tssr148460	transcription start site region 148460	1172 bp upstream
Tssr148461	transcription start site region 148461	1160 bp upstream
Tssr148462	transcription start site region 148462	1117 bp upstream
Tssr148463	transcription start site region 148463	744 bp upstream
Tssr148464	transcription start site region 148464	659 bp upstream
Tssr148465	transcription start site region 148465	96 bp downstream
Tssr148466	transcription start site region 148466	109 bp downstream
Tssr148467	transcription start site region 148467	604 bp downstream
Tssr148468	transcription start site region 148468	635 bp downstream
Tssr148469	transcription start site region 148469	725 bp downstream