rs51418168 SNP Detail

Summary

• ID
  rs51418168
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:54412862 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCATA TCAGTTGGTT AGTTGGTTGG
  T
  TTTTTGCTAC TGTTAATTCT CTGTG                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss139557199	ENSMUSSNP6399614	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T
ss324635238	CHEV_14_54795080	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs51418168					SNP	T	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:54412862 () rs orientation: forward

Symbol	Name	Function Class
A430107P09Rik	RIKEN cDNA A430107P09 gene	within coordinates
Rr492147	regulatory region 492147	1794 bp distal
Rr492148	regulatory region 492148	949 bp proximal
Tcra	T cell receptor alpha chain	within coordinates
Traj41	T cell receptor alpha joining 41	866 bp upstream
Traj42	T cell receptor alpha joining 42	368 bp upstream
Traj43	T cell receptor alpha joining 43	607 bp downstream
Traj44	T cell receptor alpha joining 44	1655 bp downstream
Tssr125558	transcription start site region 125558	1871 bp downstream
Tssr125559	transcription start site region 125559	1851 bp downstream
Tssr125560	transcription start site region 125560	1815 bp downstream
Tssr125561	transcription start site region 125561	1801 bp downstream
Tssr125562	transcription start site region 125562	1004 bp downstream
Tssr125563	transcription start site region 125563	779 bp downstream
Tssr125564	transcription start site region 125564	526 bp downstream
Tssr125565	transcription start site region 125565	437 bp downstream
Tssr125566	transcription start site region 125566	569 bp upstream
Tssr125567	transcription start site region 125567	803 bp upstream
Tssr125568	transcription start site region 125568	822 bp upstream
Tssr125569	transcription start site region 125569	848 bp upstream
Tssr125570	transcription start site region 125570	866 bp upstream
Tssr128543	transcription start site region 128543	1252 bp downstream