rs51418280 SNP Detail

Summary

• ID
  rs51418280
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:125873443 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGTAGGAG GTGAGCAGAC
  AGGCTGGGGA AGGCAGGATT CAGAACACAG AGCCCTATAG AAGTTTCTTT GTTCGTTTAT
  TTATCCATTC ATTGCAACAT CTACCGTGTC TGAAGCTCCA GCCCTGGAGT TTGGGGCTTC
  CCCTCATCTT TTCCTGATGA TCAGGCTTCA GATCCTTGGG CTGTTTTGTT TGTCCAGACC
  R
  TGTCAGGACC AGCTGCCCAA CCCTTGACCC CTTGTCCCTG TGACACCTGA TTCCCCAGAT
  CAGACCTGAG CAGCTGATAC CTTCCCATCA CTACTGCCTG GACTCCTCTC TGATGCTGGC
  TTTGCCCCAT GAGTACAGAT GTAGCCTGGG TCAGCACTCT TGCAGATCCC CCCTGCAGAC
  TCAAGGACAG TCAAGGCAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss145871798	ENSMUSSNP6765047	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
ss322450394	CHEV_7_133417785	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs51418280					SNP	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:125873443 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19689	CpG island 19689	947 bp distal
Rr655453	regulatory region 655453	1642 bp distal
Sbk1	SH3-binding kinase 1	Intron
Tssr69002	transcription start site region 69002	1847 bp downstream
Tssr69003	transcription start site region 69003	1828 bp downstream
Tssr69004	transcription start site region 69004	1816 bp downstream
Tssr69005	transcription start site region 69005	1797 bp downstream
Tssr69006	transcription start site region 69006	1779 bp downstream
Tssr69007	transcription start site region 69007	1747 bp downstream
Tssr69008	transcription start site region 69008	1684 bp downstream
Tssr69009	transcription start site region 69009	1662 bp downstream
Tssr69010	transcription start site region 69010	1476 bp downstream
Tssr69011	transcription start site region 69011	1413 bp downstream