rs51420223 SNP Detail

Summary

• ID
  rs51420223
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:88816626 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTGAC TTTAGTGAGA AAGTGCCATA
  T
  GGTGCTGGGG AGATGCCCCG TCCAG                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss132546918	ENSMUSSNP5153689	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss323782848	CHEV_11_88787114	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs51420223					SNP	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:88816626 () rs orientation: forward

Symbol	Name	Function Class
Scpep1	serine carboxypeptidase 1	within coordinates
Scpep1os	serine carboxypeptidase 1, opposite strand	within coordinates
Tssr110047	transcription start site region 110047	1524 bp upstream
Tssr110048	transcription start site region 110048	1507 bp upstream
Tssr110049	transcription start site region 110049	1452 bp upstream
Tssr110050	transcription start site region 110050	1241 bp upstream
Tssr110051	transcription start site region 110051	1203 bp upstream
Tssr110052	transcription start site region 110052	1185 bp upstream
Tssr110053	transcription start site region 110053	1157 bp upstream
Tssr110054	transcription start site region 110054	1090 bp upstream