rs51422320 SNP Detail

Summary

• ID
  rs51422320
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:121665119 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGTGCTTTA CAAATGTGGG
  AAAGACAAGA GCAAGGTAAG ACCTCAGAAC CCAGCTCCAA ATCACGACAC CAGGGTATTC
  AGAAAAATAA CTACAGAATG TGTCCAACTC CTGGGTAATT TAAATGTCCA CACTTTCTGC
  AGAAAGCAGA TGAAGGCAGA CTCCCCACTG AGCTCTCAGC ACTCACCATC AGCCACGCCT
  R
  CCATGAAGAC GATCAAAGAA ATGCGCTCAC TCACCCCAGC AGCTTCCTCT TCCTGAGAAT
  GGGGTTGTTG ACAGAGTGCA GGGGTTTGAG GCTGACCTTG AGGTCCTGGA TCCTCATGTT
  TGCCAGCTGC TCGGCGTGCG CCTGCTGGAT CCCCGCAACC ACCGCCTGCA TGCAGAGACT
  GCTATCAGTC CAAGGCTGCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss60833802	NES16021439	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs51422320					SNP	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60833802	NES16021439	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:121665119 () rs orientation: forward

Symbol	Name	Function Class
Gm42878	predicted gene 42878	within coordinates
Gm71452	predicted gene, 71452	within coordinates
Mapkapk5	MAP kinase-activated protein kinase 5	within coordinates
Rr108908	regulatory region 108908	882 bp proximal
Rr130931	regulatory region 130931	912 bp distal
Tssr48584	transcription start site region 48584	1493 bp downstream
Tssr53036	transcription start site region 53036	168 bp downstream
Tssr53037	transcription start site region 53037	204 bp downstream