rs51425084 SNP Detail

Summary

• ID
  rs51425084
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:103254129 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAAATTAGG GAGTTATTAT
  GGGACAGTCA TTTATCAAGG TTTTAAAATG ATACTGAAAA AGATACTAGT TAAGCCAGGA
  AGGGTAAACA AACTCAACTC AACAAGTGCC ACATCTGAGC CTAGCCCTGG CTGCCACTTG
  TAGGATACCA TCACTTATTC TTAGATAGAT GTTAGAAGAG ACGACAGCAC AAATGCCATC
  R
  TGTATTTGCC ATCTGTGGTT TTGCAATATG GGCAAACTTA TCCAGAGACA GGAGGCCTCT
  TTGTAAACTG GAGGCTGCAG ACTGAAGGGA GGGGTCCAAT AGGAAAAAAG ACAAATGGGG
  CGTGAGTAGC TAGGGCATAC ATGGGGGTCT GTGCTGGAAA ACAGATCTGA GGGTGGCCTC
  TTTGATTCTA CTGGGTAAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss52584126	NES15645641	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs51425084					SNP	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52584126	NES15645641	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:103254129 () rs orientation: forward

Symbol	Name	Function Class
Itga5	integrin alpha 5 (fibronectin receptor alpha)	within coordinates
Rr404655	regulatory region 404655	1545 bp upstream
Rr510623	regulatory region 510623	1695 bp proximal
Tssr136772	transcription start site region 136772	1128 bp upstream
Tssr136773	transcription start site region 136773	1046 bp upstream
Tssr136774	transcription start site region 136774	978 bp upstream
Tssr136775	transcription start site region 136775	935 bp upstream
Tssr136776	transcription start site region 136776	913 bp upstream
Tssr136777	transcription start site region 136777	869 bp upstream
Tssr136778	transcription start site region 136778	1553 bp downstream