rs51425242 SNP Detail

Summary

• ID
  rs51425242
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135778176 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCTTTCTCTC TGGGTCTTTC TCTCATGGTT TCCTGGTTTA
  GCAAGCTCAG GTGGGTACAA ACCTCCAGTC CTCTTCCTCC TCACTGTAGC TTTAGAGAGC
  Y
  CCCTGGGAGG GAGCACACCT TGTTCGAGGA GGAGTTGTGG GAGGAAGGAG TCTGGAGAAG
  GGTCTGGTAA GGCACCTAGG CCCCTTCCTT GACCCTGCC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss145548367	ENSMUSSNP42648	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs51425242					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135778176 () rs orientation: forward

Symbol	Name	Function Class
Rr12645	regulatory region 12645	225 bp proximal
Tnnt2	troponin T2, cardiac	within coordinates
Tssr227	transcription start site region 227	993 bp upstream
Tssr9020	transcription start site region 9020	1590 bp downstream
Tssr9021	transcription start site region 9021	1570 bp downstream
Tssr9022	transcription start site region 9022	1082 bp downstream
Tssr9023	transcription start site region 9023	1008 bp downstream
Tssr9024	transcription start site region 9024	972 bp downstream
Tssr9025	transcription start site region 9025	682 bp downstream
Tssr9026	transcription start site region 9026	484 bp downstream
Tssr9027	transcription start site region 9027	366 bp downstream
Tssr9028	transcription start site region 9028	328 bp downstream
Tssr9029	transcription start site region 9029	239 bp upstream
Tssr9030	transcription start site region 9030	274 bp upstream
Tssr9031	transcription start site region 9031	333 bp upstream
Tssr9032	transcription start site region 9032	916 bp upstream
Tssr9033	transcription start site region 9033	1761 bp upstream
Tssr13894	transcription start site region 13894	1585 bp upstream
Tssr13895	transcription start site region 13895	1541 bp upstream
Tssr13896	transcription start site region 13896	1014 bp upstream
Tssr13897	transcription start site region 13897	986 bp upstream
Tssr13898	transcription start site region 13898	299 bp downstream
Tssr13899	transcription start site region 13899	367 bp downstream
Tssr13900	transcription start site region 13900	377 bp downstream
Tssr13901	transcription start site region 13901	938 bp downstream
Tssr13902	transcription start site region 13902	1799 bp downstream