rs51425945 SNP Detail

Summary

• ID
  rs51425945
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:91051588 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCTTAATTT CTTCAGTCCT
  AATGACTAAA GTTCCCCAAA CTGTTAGGTC TCCACTGATG ACATAGCTCA GTAACCACTG
  TCCTCTAGCA GGTGGTCACT TCAGCGCAGA CATCACTTCC TTCCTTTTGA GGATTTGGGG
  AAGGACATCC CAGGGTCCCA TAGTGGAAGG GCAGGGCAGT AGAATGAGGC AGGCAGCTCA
  Y
  GCGCGCGTGT CCCCAACCCA CTCAGCTTAG GGGCGGGGCT CTGTGCTTCC TGATGAGGGG
  ACCCTGAGCT CAGGGAATTT CCCTGGTCCC CGGGCTTTTC CAGACATCGT GCATAAAAGG
  AGCTCTCGGG ACCTCAGAGC CCCAGACTGC GCCTCAGTGC CTCCAACAAG CTTCCTCGGG
  CACTCCAGAC TCCAGCCACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss61198269	NES16702723	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs51425945					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61198269	NES16702723	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:91051588 () rs orientation: forward

Symbol	Name	Function Class
Cxcl2	C-X-C motif chemokine ligand 2	170 bp upstream
Gm73232	predicted gene, 73232	525 bp upstream
Rr614420	regulatory region 614420	536 bp distal
Rr614421	regulatory region 614421	667 bp distal
Rr614422	regulatory region 614422	within coordinates
Tssr47224	transcription start site region 47224	20 bp downstream
Tssr47225	transcription start site region 47225	80 bp upstream
Tssr47226	transcription start site region 47226	135 bp upstream
Tssr47227	transcription start site region 47227	340 bp upstream
Tssr47228	transcription start site region 47228	383 bp upstream
Tssr47229	transcription start site region 47229	410 bp upstream
Tssr47230	transcription start site region 47230	435 bp upstream
Tssr47231	transcription start site region 47231	455 bp upstream
Tssr47232	transcription start site region 47232	620 bp upstream
Tssr47233	transcription start site region 47233	637 bp upstream
Tssr47234	transcription start site region 47234	709 bp upstream
Tssr47235	transcription start site region 47235	1459 bp upstream
Tssr47236	transcription start site region 47236	1479 bp upstream
Tssr47237	transcription start site region 47237	1528 bp upstream
Tssr47238	transcription start site region 47238	1534 bp upstream
Tssr47239	transcription start site region 47239	1594 bp upstream
Tssr47240	transcription start site region 47240	1606 bp upstream
Tssr47241	transcription start site region 47241	1621 bp upstream
Tssr47242	transcription start site region 47242	1658 bp upstream
Tssr47243	transcription start site region 47243	1681 bp upstream
Tssr47244	transcription start site region 47244	1715 bp upstream
Tssr47245	transcription start site region 47245	1735 bp upstream
Tssr47246	transcription start site region 47246	1786 bp upstream
Tssr47247	transcription start site region 47247	1830 bp upstream
Tssr47248	transcription start site region 47248	1893 bp upstream
Tssr47249	transcription start site region 47249	1963 bp upstream
Tssr51810	transcription start site region 51810	586 bp upstream
Tssr51811	transcription start site region 51811	532 bp upstream
Tssr51812	transcription start site region 51812	472 bp downstream
Tssr51813	transcription start site region 51813	504 bp downstream
Tssr51814	transcription start site region 51814	1478 bp downstream
Tssr51815	transcription start site region 51815	1512 bp downstream
Tssr51816	transcription start site region 51816	1546 bp downstream