rs51427647 SNP Detail

Summary

• ID
  rs51427647
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:40368299 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGGG GAATGGGTTG GGTCACACCG
  Y
  TTACTGTGGC CTCAGACCTC TGAAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss136330457	ENSMUSSNP2783840	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs51427647					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:40368299 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21594	CpG island 21594	636 bp distal
Gramd1b	GRAM domain containing 1B	within coordinates
Rr676839	regulatory region 676839	1578 bp distal
Rr676840	regulatory region 676840	749 bp distal
Rr676841	regulatory region 676841	1147 bp distal
Rr676842	regulatory region 676842	1678 bp proximal
Tssr84449	transcription start site region 84449	1682 bp downstream
Tssr84450	transcription start site region 84450	1093 bp downstream
Tssr84451	transcription start site region 84451	652 bp upstream
Tssr84452	transcription start site region 84452	680 bp upstream
Tssr84453	transcription start site region 84453	1421 bp upstream
Tssr88934	transcription start site region 88934	1619 bp upstream
Tssr88935	transcription start site region 88935	1568 bp upstream
Tssr88936	transcription start site region 88936	1547 bp upstream
Tssr88937	transcription start site region 88937	1483 bp upstream
Tssr88938	transcription start site region 88938	1226 bp upstream
Tssr88939	transcription start site region 88939	1191 bp upstream
Tssr88940	transcription start site region 88940	1159 bp upstream
Tssr88941	transcription start site region 88941	870 bp upstream
Tssr88942	transcription start site region 88942	855 bp upstream
Tssr88943	transcription start site region 88943	827 bp upstream
Tssr88944	transcription start site region 88944	779 bp upstream
Tssr88945	transcription start site region 88945	762 bp upstream
Tssr88946	transcription start site region 88946	666 bp upstream
Tssr88947	transcription start site region 88947	637 bp upstream
Tssr88948	transcription start site region 88948	607 bp upstream
Tssr88949	transcription start site region 88949	469 bp downstream