rs51428054 SNP Detail

Summary

• ID
  rs51428054
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:81440356 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGTAGTAA TTTGATGAAT
  TTTGAGGTGA AATCATGATG CCCTAAAAAT ATTTACATTA CGATTCATAA CAGTAGCCAA
  ATTAGTTAGG AAGTAGCAAC AAAAGTAATG TTACCGTTGG GAGTCATCAC AGCATGAGGA
  ACTGTATTAA AAGGTTGCAG CATTAGGAAG GTTGAGAACC ACTGCTCTAG AGACTTGACA
  R
  TTTTTATCAG GGGAGGAACA CGGATTGGTG TATTTCTGAT GGTGCCTGGA TGGGCAAAGG
  AGGGGGAAGC AATGTCCTCT AAGGAACCGT CAGCCTTCTC CACAGGTACC TCTAGAGTAC
  CTCATCACCA GCTAGAAAGG ACAGGACCCC GCCTCAGGTC AATCTGTCAC ACAGCCACTT
  GCCCCAATGG AAAGAACAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145164805	ENSMUSSNP4981954	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs51428054					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:81440356 () rs orientation: forward

Symbol	Name	Function Class
3110040N11Rik	RIKEN cDNA 3110040N11 gene	1130 bp upstream
Btbd1	BTB domain containing 1	1466 bp downstream
Gm45016	predicted gene 45016	within coordinates
Gm45845	predicted gene 45845	289 bp upstream
Rr400414	regulatory region 400414	979 bp downstream
Rr650206	regulatory region 650206	1097 bp distal
Rr650207	regulatory region 650207	409 bp distal
Rr650208	regulatory region 650208	965 bp distal
Tssr73353	transcription start site region 73353	1118 bp upstream