rs51428112 SNP Detail

Summary

• ID
  rs51428112
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:129469267 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGAA GCTGTGTGCA CCTCAGCTGC
  W
  GAGGGAAGGG GGAACAGGAA ATGGC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
ss147442843	ENSMUSSNP6572603	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		A
ss321313987	CHEV_4_129252718	CHEVERUD	SCREENING_POP	f	SNP			T		A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
rs51428112					SNP	T	T	T	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129469267 () rs orientation: forward

Symbol	Name	Function Class
Fam167b	family with sequence similarity 167, member B	1341 bp downstream
Gm68905	predicted gene, 68905	81 bp upstream
Lck	lymphocyte protein tyrosine kinase	1852 bp upstream
Rr367705	regulatory region 367705	within coordinates
Rr600276	regulatory region 600276	1844 bp distal
Rr600277	regulatory region 600277	1524 bp distal
Rr600278	regulatory region 600278	92 bp distal
Rr600279	regulatory region 600279	within coordinates
Rr600280	regulatory region 600280	464 bp proximal
Rr600281	regulatory region 600281	1587 bp proximal
Rr600282	regulatory region 600282	1824 bp proximal
Tssr39177	transcription start site region 39177	1706 bp downstream
Tssr39178	transcription start site region 39178	161 bp upstream
Tssr43525	transcription start site region 43525	1876 bp upstream
Tssr43526	transcription start site region 43526	1845 bp upstream
Tssr43527	transcription start site region 43527	1822 bp upstream
Tssr43528	transcription start site region 43528	273 bp upstream
Tssr43529	transcription start site region 43529	177 bp upstream
Tssr43530	transcription start site region 43530	122 bp upstream
Tssr43531	transcription start site region 43531	73 bp upstream