rs51428245 SNP Detail

Summary

• ID
  rs51428245
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:30064122 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTAAGAAA TCCCTTCTGC
  TCTCTCTGGT CTCCCTGGGT TTCCCTGTGT GCAGATGTCA AAGGTGGGAG GGGCCTGCCA
  AGGTCTCTGG GTTGAGTTGC CCACCAAGAG AAACTGATTA AGGGCCAGAG GAAGAAGTAC
  TCATAACTAT TAGAGTATTT AGTACTCTTG GTACTCATTA TAGTACAGCC TGGTCATGTG
  M
  CTCACCAGCC AAGGTCAGCT GGCTTCTACA CGGTCAGGAG ACCCGCTTCC AAAAGATCAC
  CCTCTGGTCA TCTGCTGCCA TCCTCCTATA GTGGGTGGCT GAGCACAGAC GCCAGAAGCC
  CTGCCTGGGC GCTCACCCCA GCTCCGACGC ATGCTAAGTT TCTCAAGTGT GGATTTCTAA
  GGCATGCTTA TTCATCAGTA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60556137	NES16574291	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51428245					SNP	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60556137	NES16574291	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:30064122 () rs orientation: forward

Symbol	Name	Function Class
Gm56908	predicted gene, 56908	1395 bp upstream
Mdga1	MAM domain containing glycosylphosphatidylinositol anchor 1	within coordinates
Rr330461	regulatory region 330461	1722 bp distal
Rr330462	regulatory region 330462	1279 bp proximal
Rr341132	regulatory region 341132	879 bp proximal
Rr392501	regulatory region 392501	1660 bp upstream
Tssr143596	transcription start site region 143596	1382 bp upstream
Tssr143597	transcription start site region 143597	1399 bp upstream