rs51428895 SNP Detail

Summary

• ID
  rs51428895
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:54388973 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTACCACTTG GAAGAATCCT
  TGCACACACC CAGCCCCTGC TGACAGAAGT CATTTTCAGA GCATCCAGGT CCCCAGCCCA
  GCCCTAGACT AAACCATCTT CTTGATGAAT AGCTGACTAC TCCTCCTATT GCCCAACTTC
  AGGGACATCT GACCACACCC AAGAACACAG ACATGGGCTC CACAGGCCCT CACACAAGAC
  R
  CGTACAGTCA GGTGCTGGAC ACTGTGCCGG TGGTGTAAGT GACATCTCTC AGCTCCAATG
  TCCTTCTAAC TTTTCTTGAA AGGCATTCTT CAGAAAGGGC ACTTCTGAGA AGGTCACACA
  GTAAGTCAGC GAGGCTTCTG AAGACACCCT GCCAGGACTA TACCACCTCC AGCGCCTACT
  TATCAAACAC AGATTAATAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62393812	NES17237186	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51428895					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62393812	NES17237186	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:54388973 () rs orientation: forward

Symbol	Name	Function Class
A430107P09Rik	RIKEN cDNA A430107P09 gene	within coordinates
Gm62807	predicted gene, 62807	1637 bp upstream
Rr492143	regulatory region 492143	1147 bp proximal
Rr492144	regulatory region 492144	1513 bp proximal
Rr492145	regulatory region 492145	1648 bp proximal
Tcra	T cell receptor alpha chain	within coordinates
Tcrd	T cell receptor delta chain	within coordinates
Tssr125542	transcription start site region 125542	1630 bp upstream
Tssr125543	transcription start site region 125543	1674 bp upstream
Tssr125544	transcription start site region 125544	1690 bp upstream
Tssr125545	transcription start site region 125545	1737 bp upstream
Tssr128540	transcription start site region 128540	106 bp upstream