rs51430614 SNP Detail

Summary

• ID
  rs51430614
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:28684633 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACCACCTGA ATCAAGGACC
  CGCCCCCTTC TGAGGCAGAG TCCTTGTAGT CCTTGTAGTC CCAAGTGCTA AGATTAATAT
  GCTCTGCCAC AACCAGCAAA CAACTCCCCC CTCAAACATT CTCCTGTGGT TTGGACATAG
  CCTAGGGGTT CGCAAGTTAA ACCATGACGC TCATATTGAG GTTCTAAGGT GGAGCCTCCA
  Y
  CGCACAATCC CGGTGACTCT ACAAGAGACA CCAAAAGGCC AGCAGAGAGC TATGTCCATA
  TGTCCATCAT CCTAGCACTG GAGAGGTAGA GGCAGGAGGA CGGAGTTCAA GGCTAGCCTC
  AACTACAATC CAAGTCGGGA GACCAGCCTA GGTTAGAAGA GATTCTGTCT GGTGAGTCTG
  ATCAGACCAT GACTCTGGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52348252	NES15378189	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51430614					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52348252	NES15378189	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:28684633 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4510	CpG island 4510	631 bp proximal
Gm53713	predicted gene, 53713	1435 bp upstream
Rps7	ribosomal protein S7	within coordinates
Rr265285	regulatory region 265285	within coordinates
Rr369505	regulatory region 369505	1163 bp upstream
Tssr116014	transcription start site region 116014	599 bp downstream
Tssr116015	transcription start site region 116015	1198 bp downstream
Tssr116016	transcription start site region 116016	1209 bp downstream
Tssr116017	transcription start site region 116017	1233 bp downstream
Tssr116018	transcription start site region 116018	1257 bp downstream
Tssr116019	transcription start site region 116019	1280 bp downstream