rs51431629 SNP Detail

Summary

• ID
  rs51431629
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:42173440 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCGAG GACTGAACCT ATGAGGAAAG
  R
  AAAAACTGTT TGGATCTCAG GGCTT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss136379292	ENSMUSSNP1335430	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
ss322933966	CHEV_9_42070227	CHEVERUD	SCREENING_POP	f	SNP			G	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs51431629					SNP	G	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:42173440 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21617	CpG island 21617	1510 bp proximal
Rr677189	regulatory region 677189	1451 bp proximal
Sc5d	sterol-C5-desaturase	within coordinates
Tssr89017	transcription start site region 89017	3 bp upstream