rs51431661 SNP Detail

Summary

• ID
  rs51431661
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:50195312 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCACCCTGCC AAGATGTGGA
  GTTGCCTAGG AGATGGCTTC TGTCTGCATG TATCTAAAGG TAATATCCAT GCTGCTAGCT
  ACTTTGCTCA TCACTGTGGC AAAGCACCTG ACAAAAACAA CTTAAAGAAA GAAGAGTTTC
  TTCTCTCTTT AAGATGGAAT CCACCCTGTA AAGCAAGGAA GTCATGTACA GACTAGGAAT
  Y
  CATGAGCAGT AGGATTAAGC TCTTCCATGA GCCTCCATTG ACACTAGAAG TGTAGACCAC
  AGGTGCAATA TGCACTATGA ACACCAGCTG TCACTGCTCT ACAGTTTACA AAGCCACCCT
  GAGTGGTTAC CAGGGAGGAG AATTGTTGTT AAGAACATTT TCTGGATGTG AAGCATAAAG
  GTCTAGGACA ACATGAATTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss146531312	ENSMUSSNP684956	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs51431661					SNP	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:50195312 () rs orientation: forward

Symbol	Name	Function Class
Gm13483	predicted gene 13483	within coordinates
Gm74801	predicted gene, 74801	330 bp upstream
Rr556732	regulatory region 556732	124 bp distal
Rr556733	regulatory region 556733	within coordinates
Rr556734	regulatory region 556734	1388 bp proximal
Rr556735	regulatory region 556735	1502 bp proximal
Rr556736	regulatory region 556736	1620 bp proximal