rs51434678 SNP Detail

Summary

• ID
  rs51434678
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:18993247 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACGACAGAGA GCACATGCGT
  ATTTCTTCCG TGCTGAGTGG AAGGCAGTAA TCTGTGGACG TACAATGCTT GCTAGTGGTA
  AGGCAGGTGT TTACCATGCT ACAAGCATGA CACAGAAACC ATCAGAAGGG CTTTTCATTT
  TAATTTGAAA CATCTGAACA GAGGCACGGC TATTGCTAAT CCTCAAATTA AACAACAGGC
  K
  TTTTCCAGAG TTGCATACCA AACTGGCCGA GTTGCCAAGG GAACTCCCAC CCTTTGCTCA
  TGTGCGTCTA AGCCAGAACC TTGCAAACAG ATGCTCATTT CATCCTTATT AAACATTCCT
  CATTGCAAGC ATTGGGTAAA TATTTGTTCA GTGATAAGAA CCATGAATGG AAAACCTGTG
  TTTCCAAACA CACAGCTCAT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61253810	NES16864021	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51434678					SNP	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61253810	NES16864021	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:18993247 () rs orientation: forward

Symbol	Name	Function Class
Gm67464	predicted gene, 67464	within coordinates
Rr222171	regulatory region 222171	1901 bp proximal
Rr226792	regulatory region 226792	within coordinates
Tssr92530	transcription start site region 92530	53 bp downstream
Tssr96897	transcription start site region 96897	439 bp upstream
Tssr96898	transcription start site region 96898	421 bp upstream
Tssr96899	transcription start site region 96899	393 bp upstream