rs51436465 SNP Detail

Summary

• ID
  rs51436465
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:48953010 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGCTACTA CTGGTAGAGC
  CTGGAAGGTC AGGGGTGGAA GGTAGAAGAG GATGGGGTAG ATAAGCCAAA GAAAACTGTG
  TCTTAAAAAC ATATTTATTT ATTTCTAACA ATGAAAGAAA TCAAATCCTG AAGGGTAGCG
  GTTATAAGAA ATATTTTCTT ATCTATTTGG TCTGCTTTAA ATTCCATTCT TCAAAAGACT
  R
  GGACCTGTCT CCTCACTTCC TCTCATTTTG AAGTTTTGGC TGCTGAAAAG AACATATAAT
  AACATGAAAT AATGTATCAT AAGTTACTTC CAAGGATCTT GGCCCAGCCT TATCAGTTCT
  GGGGAGGCTG TTGTTGTCCT GAACTTTTAC TGCTGCCCAA GCCAGACAGG AGACTTGAGG
  TCCGGGTGCC CAGGGTTATG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61005713	NES16117547	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	G	G	G	G	G	A	G	A	A	G
ss149216069	ENSMUSSNP4416900	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G						G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51436465					SNP	G	A	G	G	G	G	G	G	G	G	G	A	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61005713	NES16117547	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:48953010 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19143	CpG island 19143	922 bp proximal
Nav2	neuron navigator 2	within coordinates
Rr167850	regulatory region 167850	390 bp proximal
Tssr66792	transcription start site region 66792	559 bp upstream
Tssr66793	transcription start site region 66793	818 bp upstream
Tssr66794	transcription start site region 66794	989 bp upstream
Tssr66795	transcription start site region 66795	1019 bp upstream