rs51436515 SNP Detail

Summary

• ID
  rs51436515
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:123258746 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTTTTTTT TTTTGAGACA
  GGGTTTCTCT GTGCAGCCCT GGCTGTCCTG GAACTCATTC TGTAGACCAG GCTGGCCTCG
  AACTCAGAAA TCTGCCTGCC TCTGCCTCCC AAGTGCTGGG ATTAAAGGCA TGTGCCATCA
  CTGCCCGGCT GTATGCAAAT TCTAATGGTG TCTTTTTTGA GGAATATGTC ATTGAGAATA
  Y
  GAATAGTTTA TTACTTTATT TTTGTGGCTA AAGTTGTTTT TCTGTAACCT AATGTACAAA
  ACACTACATT TTTCGAGTTT CAATTGGATG ATTCCCCACC TGTCCAATTT CTAAATAGGA
  AATTTATGTT AAGATAAATT AAAATTTTCC CGGCCCAAGA TAGTTTTGGC TCATGTTTCA
  TCACAGCAAT AGAAAAGTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60936915	NES16189361	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51436515					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60936915	NES16189361	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:123258746 () rs orientation: forward

Symbol	Name	Function Class
Clec4e	C-type lectin domain family 4, member e	2 bp downstream
Tssr58808	transcription start site region 58808	943 bp upstream
Tssr58809	transcription start site region 58809	1605 bp upstream
Tssr58810	transcription start site region 58810	1631 bp upstream
Tssr58811	transcription start site region 58811	1667 bp upstream
Tssr63019	transcription start site region 63019	215 bp upstream
Tssr63020	transcription start site region 63020	706 bp downstream
Tssr63021	transcription start site region 63021	792 bp downstream
Tssr63022	transcription start site region 63022	827 bp downstream
Tssr63023	transcription start site region 63023	855 bp downstream
Tssr63024	transcription start site region 63024	958 bp downstream
Tssr63025	transcription start site region 63025	1011 bp downstream
Tssr63026	transcription start site region 63026	1022 bp downstream
Tssr63027	transcription start site region 63027	1071 bp downstream
Tssr63028	transcription start site region 63028	1084 bp downstream
Tssr63029	transcription start site region 63029	1115 bp downstream
Tssr63030	transcription start site region 63030	1145 bp downstream
Tssr63031	transcription start site region 63031	1202 bp downstream
Tssr63032	transcription start site region 63032	1226 bp downstream
Tssr63033	transcription start site region 63033	1251 bp downstream
Tssr63034	transcription start site region 63034	1270 bp downstream
Tssr63035	transcription start site region 63035	1291 bp downstream
Tssr63036	transcription start site region 63036	1345 bp downstream
Tssr63037	transcription start site region 63037	1375 bp downstream
Tssr63038	transcription start site region 63038	1412 bp downstream
Tssr63039	transcription start site region 63039	1471 bp downstream
Tssr63040	transcription start site region 63040	1529 bp downstream
Tssr63041	transcription start site region 63041	1578 bp downstream
Tssr63042	transcription start site region 63042	1603 bp downstream
Tssr63043	transcription start site region 63043	1613 bp downstream
Tssr63044	transcription start site region 63044	1635 bp downstream
Tssr63045	transcription start site region 63045	1726 bp downstream
Tssr63046	transcription start site region 63046	1745 bp downstream
Tssr63047	transcription start site region 63047	1768 bp downstream
Tssr63048	transcription start site region 63048	1796 bp downstream
Tssr63049	transcription start site region 63049	1811 bp downstream
Tssr63050	transcription start site region 63050	1835 bp downstream
Tssr63051	transcription start site region 63051	1887 bp downstream