rs51437854 SNP Detail

Summary

• ID
  rs51437854
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:41043903 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCCATTATT GAGGGAAGTC
  AGGGCAGGAA CACATTCATG AAGGACCTTT CTTCCAGGGG CTTAGTCCCT TCCACATCAA
  TCAACAATGA AGAAACTGCC TATTGGTCAT TTTGAGAGAG GCATTTCCTC AGTTAAGGTG
  ACTCTAGTTT GTGTCCAGTT AACAGAAGCT AACCAACCAC AGTGAATAAC AAGTTAAATT
  R
  GACAGCAGTT TGTGTTAAAA AATGAGTGCA GATTTTATGT ATTCAGTAAT TATGTTTTAA
  GACATGGTCT GGCTATGTAG CCCAGAATGG CTTTGAACTG GTAATCTTCC TGCCTTAGTC
  TCCCAGCACT ACAGATGTGC ACCACCTTGC CTAACTTCAG TTGTATTTTC TCAGGAGTAT
  TTCTCCAGGT GGTATGCTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60399648	NES15901250	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51437854					SNP	G	G	G	G	G	G	A	G	G	G	A	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60399648	NES15901250	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:41043903 () rs orientation: forward

Symbol	Name	Function Class
Tssr28989	transcription start site region 28989	550 bp upstream