rs51437877 SNP Detail

Summary

• ID
  rs51437877
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:25758786 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACTCCACCA GGCAGGAGAT
  ACAACCCCCT CCCCCCTCCT CTTCCCACTG TACTTCAGAG GAGGCAGACA GGAGCCCTGC
  TTTTCTTGAT CGAGCTAAAA ATAACTCATT TGTAAGGTGT GTTACCATTA CCTCCTTCAA
  GAAGCAGGGA AAATAAAATC ACCCTTGCTG TTGGTGAGGG TGAGAAGACA GTCGGGCCGG
  Y
  AGGTGTGGAG CAGCAGCTTT GCCCTCCCCA AAGGGCACTA ATTTTTTTCT GATGGAATAG
  CTGGAGTGAC AGGAGCAGTT TTTGCCTCTC ACTAGCTGGC GACTGAACGA CACACAAGCT
  GTGATTCCTG CCCCATCCCC CTCAGAAGTA GGAAAGCACA GGAAAAGCCA AGATACTGGT
  GAGAAAACCT ATTCTAACTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss52193822	NES15225014	PERLEGEN	MM_PANEL2	f	SNP	C	T	C	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs51437877					SNP	C	T	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52193822	NES15225014	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:25758786 () rs orientation: forward

Symbol	Name	Function Class
Gm47930	predicted gene, 47930	785 bp upstream
Gm66740	predicted gene, 66740	within coordinates
Rr218979	regulatory region 218979	15 bp proximal
Rr218980	regulatory region 218980	415 bp proximal