rs51438667 SNP Detail

Summary

• ID
  rs51438667
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:96321032 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGATGTTAC AGATTTCTGA
  CTGTGCCTCT AATTCAGCTG AATAAAACTG AAGTGGGACC CCACGTGCTT GCATTTCCTG
  GCTGAGAGGA GGTAAGACAA CTGTAGGTGC CCAGATTCAG CCCGAACATT AGGCAAACTG
  CATTCACTTA GCTCAGACCT GGAGGCTCAC GGTCTCAGAG ATGCAACTGC AGGGACCACT
  R
  GCCAAAAGAG CAGTGGGAAC TGTGGCCATG GGGCTGTCAT TGACTGCTTT TTCTTTTTGT
  TTGTCTTGAG ACCTTGTTTC CGGTAGTCCA GACTTGCTTC AAATCTAAAA ATGTAGCCAA
  GAATGAACTT GAACTTTGGT ATTCCCGTCT TATTCCCTAA GAGCTGGGAT CACAGGTGTG
  CCCACCATAC CCAGTCTGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss61442158	NES16828203	PERLEGEN	MM_PANEL2	f	SNP	A	G	G	G	G	G	A	G	G	G		G	G	A	A		G
ss323108998	CHEV_9_96339398	CHEVERUD	SCREENING_POP	f	SNP											A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs51438667					SNP	A	G	G	G	G	G	A	G	G	G	A	G	G	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61442158	NES16828203	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:96321032 () rs orientation: forward

Symbol	Name	Function Class
BC043934	cDNA sequence BC043934	within coordinates
Cpgi22163	CpG island 22163	1753 bp distal
Cpgi22164	CpG island 22164	760 bp distal
Gm50488	predicted gene, 50488	within coordinates
Gm68666	predicted gene, 68666	138 bp downstream
Rr368835	regulatory region 368835	656 bp downstream
Rr684963	regulatory region 684963	1289 bp distal
Rr684964	regulatory region 684964	within coordinates
Rr684965	regulatory region 684965	1141 bp distal
Tssr90963	transcription start site region 90963	753 bp upstream