rs51439136 SNP Detail

Summary

• ID
  rs51439136
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:165592667 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGTATTGTTC TAAACAAATT TAAATTAGCT ACTGCCTTTT
  AAAACTGCAA TCCTAGGGGC TAGGGAAATA GCCCAGTTGG TAAAATACTT GCCATGTAGG
  Y
  GCGAGGACCT GTATTTGGTC CTCAGTACCC ATCTTGACAG CTTGCACGCA CATGTGATCC
  TACACTGGCT CAACGGCTTG CACACACTTG CACACACGT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss146006564	ENSMUSSNP291430	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs51439136					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:165592667 () rs orientation: forward

Symbol	Name	Function Class
Cpgi955	CpG island 955	762 bp distal
Creg1	cellular repressor of E1A-stimulated genes 1	within coordinates
Rr28876	regulatory region 28876	within coordinates
Rr396502	regulatory region 396502	1259 bp downstream
Tssr9817	transcription start site region 9817	1314 bp downstream
Tssr9818	transcription start site region 9818	748 bp upstream
Tssr9819	transcription start site region 9819	1010 bp upstream
Tssr14792	transcription start site region 14792	1509 bp downstream