rs51439465 SNP Detail

Summary

• ID
  rs51439465
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:127544651 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACACACACA CACACACACA
  CACACACACA CACACACACA CACACACCAA CCATAAAATT ACTTCATTGC TAGCTACTTC
  ATAACTAATC TTGCTGCTGT AATGAATCAT AATGTAAACA TCAGATATAC AGGATATCTG
  ATATGTGACC CCCCCACCAA AGAGATCTTG AAAACCACGA TTTGAGTAGC TTCCCTAAAT
  K
  GGCTCACACA GAGCTACCCA TCATGCAGTG CATTTGTAGT AGCCAGCCCT ACTATGTGAT
  GTGGCTAGAA TGGGTCTAGA CTGGGTTGTG GGGAGATCCA GTTTCCTCAG CAGACCTGCT
  TTCCTTATAG CCAGCTCTCC AGGGCCAAGC CAGATGCTGG GAGTACCTGG GGATATATAT
  AGTGCAGGAA CCCTCTCTGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147538513	ENSMUSSNP5255261	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T	G
ss320500517	CHEV_2_127528467	CHEVERUD	SCREENING_POP	f	SNP				G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs51439465					SNP	G	T	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:127544651 () rs orientation: forward

Symbol	Name	Function Class
D2Dcr72	DNA Segment, Chr 2, Derry C. Roopenian 72	122 bp distal
Gm10765	predicted gene 10765	within coordinates
Mall	mal, T cell differentiation protein-like	1659 bp downstream
Tssr20034	transcription start site region 20034	310 bp downstream