rs51440455 SNP Detail

Summary

• ID
  rs51440455
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:30222237 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATTTAAAGGC TGCCTCTTTT TATGTGGCAA TTCCATGAGT
  TGGAGAGAAG ATTTGAGGGT AGCATGAGAA TGAGGAATGC TGTATATGTT TATTCATTCC
  Y
  CCCCCCCCCC CCAGTCTTGG TATGTCTATG GAGTCCTGGC TATTTTGGAG CTCATGATGT
  AGAGCACGTT GTCCTCAAAT TCACAAAAAC CTGCCAGCC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145438769	ENSMUSSNP4539278	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs51440455					SNP	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:30222237 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8934	CpG island 8934	837 bp proximal
Gm50019	predicted gene, 50019	within coordinates
Tssr143600	transcription start site region 143600	1093 bp upstream
Tssr143601	transcription start site region 143601	1217 bp upstream
Tssr143602	transcription start site region 143602	1515 bp upstream
Tssr143603	transcription start site region 143603	1590 bp upstream
Tssr143604	transcription start site region 143604	1766 bp upstream
Tssr147242	transcription start site region 147242	1357 bp downstream
Zfand3	zinc finger, AN1-type domain 3	1776 bp upstream