rs51441399 SNP Detail

Summary

• ID
  rs51441399
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:93225014 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGCTTGTGC TTGGTCCACT
  TTATAGAACT CAGGACCCCC TGCCTCAGTA ATGCTTGCAC TCAGAGTGGG ATGGGTCTTC
  CCACTTTATT TAACTTAATT AAGACAATCC CCCATAGACC AACTCAGTGT AGATAACTTC
  TCACTGAGAC TCTTTCCAGG AGAGTCTAAG TTGTGTCAGG TTGATAAGTC AGCATATAGC
  Y
  ACCACACGTG GACAATCAAG AATTCAAATG TTCATTTAAT GGTAACACAA CTCAAAGCCA
  TGATCAACAA CCAGAGAAGG AGACACGGTA TGAGGGTAGG ACTTCAGAGT CAAAGAGCAC
  TGTTTCCTGT CACTCTCTAC CACTTTCTTA TTGATGGCCT GATGGTTCCT ATCTGTGAAA
  TGGAGCAGAT CATAGCTCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss148843996	ENSMUSSNP6905001	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss321614319	CHEV_5_93506181	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs51441399					SNP	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:93225014 () rs orientation: forward

Symbol	Name	Function Class
Gm71590	predicted gene, 71590	19 bp downstream