rs51442045 SNP Detail

Summary

• ID
  rs51442045
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:53520856 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGCCAGAA TGACAAGGTG
  ACTCATCCCA GGAATTGGCT GCAGCTCCGG GGAGGGAGCT GGAGGCTGCC ATGTAATCCC
  GTAACCGTTT GCTGACTGCA GGAGTAAGCC CTCCACTGTT GGGCAGTCAG TACCAAAAGA
  TGGAAACGAG AAATGAAGGT TTTAGAAAGG ACTTTGTCTC AGGATGTGTG CTTAACTAGT
  R
  ACATGACAGC AAGTGAGTCC TTGGGGCCAG TGAAAGACAA GTAGGTTTTC TGGGGCCTCT
  CTGAAGTACC TCAGGTTGCT CTCTATAAGA ACAGAAGGTT CCTAAGCAAG GATGTCCAGT
  CCACCTCTAA GGCCTTGGCT TTCTAAGGCC TCTGGGGCAG AGTTGTTGTC TTTTCCCTGC
  TGGTCCTGGG ACTCTGATGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63284352	NES17498685	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51442045					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63284352	NES17498685	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:53520856 () rs orientation: forward

Symbol	Name	Function Class
Dusp5	dual specificity phosphatase 5	within coordinates
Rr549550	regulatory region 549550	within coordinates
Tssr156987	transcription start site region 156987	1385 bp upstream
Tssr156988	transcription start site region 156988	1399 bp upstream
Tssr156989	transcription start site region 156989	1476 bp upstream
Tssr156990	transcription start site region 156990	1501 bp upstream