rs51442711 SNP Detail

Summary

• ID
  rs51442711
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:81199174 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTGAGCCA CCCAGCCACC
  TGTGCTGGCC CAGGACAATG GCAGTCCTGT CGGTAACTGC TAAGCAGAGG TGGGGTTGAG
  CGTGGGGTCT AGGAGTTTGA CAGAAGGCTG GGAGGCTCCC TGAGAACCTA GCCCGTGTGC
  CAGAACCTCT GTGTCGCTGC AGGGCCCAAG CAAAGGTCCT TGGGCAGGAC TGAGGAGACC
  R
  TGCAGGAGCC AAGAGACCAA GGGCAGGGCT GTGGGCTGCA GGGGACTGTG AGCAAGCGCA
  TGCAAATGTG CATATTTGGG GGTATGTGTC TAGGGTCCCC TGGAACTTGA AATGGAAACC
  ACAGAGGCAG TTTCAGGAGA CACTGCGGCA CTCCCCAGGG ACCAGCAGCT GGACCTTTCT
  CTCCTGTCCT TCATTCACCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52387641	NES15272374	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51442711					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52387641	NES15272374	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:81199174 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1975	CpG island 1975	491 bp proximal
Mfsd12	major facilitator superfamily domain containing 12	within coordinates
Tektip1	tektin bundle interacting protein 1	684 bp downstream
Tssr94743	transcription start site region 94743	686 bp upstream
Tssr94744	transcription start site region 94744	945 bp upstream
Tssr94745	transcription start site region 94745	980 bp upstream
Tssr94746	transcription start site region 94746	1057 bp upstream
Tssr94747	transcription start site region 94747	1075 bp upstream
Tssr98595	transcription start site region 98595	1506 bp downstream