rs51442739 SNP Detail

Summary

• ID
  rs51442739
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:88204874 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACAACCATA CGGCTTACCC
  ATGATTGTCA ACATCCTTAT TTTACAGAGT CACTTGTACC GCTAATCAAT TAGCTCGAAC
  TTCCATGCCA GGCATTTTAA AAAACCAGGC TGCACTGTGT CTCCAGGCAT TTCTTTCAGA
  GAAATTAAAT TGGAAATCAG CAACTCAGGG ATTCAAGGTC CCTAGGAGCA AGGGGGACAA
  G
  TGCAGCATTG CAAATTCTAG GCCCACTGTT CTGGCCCAGT GCCAACAGGA AGGGAGGGCT
  TCGTACCCTG GGGCGTCTCG TAGGTTAACG TCCTCATCTC CACCAACGGG TCGTCCTCAA
  AGGGCTGGTT GTACTGCGGG GAAGGGAGAG CTGGTCAGAC TCCGGGGCGC TGGATCCCCG
  CCCACCGCGC CCTGCCCGCC                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss144900238	ENSMUSSNP3806300	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs51442739					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:88204874 () rs orientation: forward

Symbol	Name	Function Class
Cpgi540	CpG island 540	within coordinates
Cpgi541	CpG island 541	995 bp proximal
Hjurp	Holliday junction recognition protein	within coordinates
Rr29783	regulatory region 29783	within coordinates
Tssr12873	transcription start site region 12873	112 bp downstream
Tssr12874	transcription start site region 12874	318 bp downstream
Tssr12875	transcription start site region 12875	358 bp downstream