rs51443460 SNP Detail

Summary

• ID
  rs51443460
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:118686978 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGCAATTCA CAGCTAACAT
  TCTAACGATT ATCCGTCAAT CACCCACCTT CGAGACTAAA ATGCAATCCC CAGAGACCCC
  TTTGCTGTGT GCCAGCGTGT GCCCAGGAGG CCAGATAGGA GGAAACAGTG GAGGAGACGG
  TACAGTGAAG TGAGATCTTT CTGGGGAGAG GGAAATGCCA GTGTCTGCTT CAGGGCAGTA
  Y
  CATCTTGGCC AACTTCATGC CTTCCAGCCA CACAGAGACT GTGAAATGCC TGGGACACAG
  TGTAGCTGAG GAAACCCTGC CATGATGATA CACACCTTTC CAAAGAGCTA TGCTTCCCTC
  CCTCACTCTG CCTAGGTCCA AAATTACACT GTAGCCCCTC ACACATTGGA TGATGAACAA
  ACAATACGCA CCTCTGTGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss61322064	NES16929608	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T		T	T	T	C		T
ss323503874	CHEV_10_118288129	CHEVERUD	SCREENING_POP	f	SNP											C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs51443460					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61322064	NES16929608	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:118686978 () rs orientation: forward

Symbol	Name	Function Class
Gm40776	predicted gene, 40776	1941 bp downstream
Gm67702	predicted gene, 67702	1808 bp downstream
Rr226050	regulatory region 226050	1623 bp proximal