rs51445092 SNP Detail

Summary

• ID
  rs51445092
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:53883293 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTTTTTCT GGTCGCTAGG
  AAACCTGCAG ATACATTTCT GTCCAACGCT TAGATGATTA ACAAGTTGGC AGAGCCTGTG
  CTAATCTTAT CTGCAGCTAT CATACCTCCT GACTTTCCAC AGCTCTGCTT GATCATGCAC
  AGTTTCTGTA AGTCATTTTC ATTCTTTGCA GAATGAGGCA GGAGACAGAC GGATTGTCTC
  R
  GCATCATCTC TTGCAAGCAG ATTGTGGCAG ACTGAGTGTG AAATAAAACA ACATCAATAT
  ATCCTAATTT TCTAAGGGAT TTCTAAATAA TTTTGTGATT ATCCATCACT AAAATACATT
  CCAGGAACAA TTTCTAATTC TCCAAACATT CTAAATGTCA GAATCTTATC AAGTCAGAAA
  TGTCCCCCAC TACTTTCTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss52308683	NES15297939	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A		A	G		A
ss323306467	CHEV_10_53727003	CHEVERUD	SCREENING_POP	f	SNP									G			A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs51445092					SNP	A	A	A	A	A	A	A	A	G	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52308683	NES15297939	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:53883293 () rs orientation: forward

Symbol	Name	Function Class
A030011A13Rik	RIKEN cDNA A030011A13 gene	within coordinates
Man1a	mannosidase 1, alpha	within coordinates
Rr401891	regulatory region 401891	953 bp downstream
Rr431501	regulatory region 431501	769 bp distal
Rr431502	regulatory region 431502	1219 bp proximal