rs51445377 SNP Detail

Summary

• ID
  rs51445377
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:16727570 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATAAACAG GGTTTTGAGC
  CATCGTATTG GTTCTGGGAG TCAAACCCAG GTCTTACATA AAGGTAGCCC ATGCTCCTAA
  CCATTGAGCC ACCTCTAGTC CCATCCCCTT AATTTTAAAC GCACGTTCAT AATTGCAATA
  GCCTTCAAAG GATTTGAGCC ATCAGCACTC GCACCTTTTG GGCTTGCACG TCTAGGATGG
  Y
  AGGTTGGGGG ACCCGTTGCC TTTTGGGAAG GATGATGACG TGGGTTTTGG CTGCAGCTAA
  GGGAAGCCCT GGCCCCATTG AGGCTCTGGG GGGCAGCCAC ACCTCTGTGG GGGAGGAGAG
  GGAGGCTGCC CTGAAGGGGA GTGGACAGCC CCGCTGCCAG TCTTCCCAGG CTTAGAGTGT
  AAGATGAGAA GGAGAAGGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss148402173	ENSMUSSNP2147905	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs51445377					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:16727570 () rs orientation: forward

Symbol	Name	Function Class
Ccdc8	coiled-coil domain containing 8	257 bp upstream
Cpgi18410	CpG island 18410	346 bp proximal
Rr642838	regulatory region 642838	927 bp distal
Tssr64672	transcription start site region 64672	153 bp upstream
Tssr64673	transcription start site region 64673	220 bp upstream
Tssr64674	transcription start site region 64674	332 bp upstream