rs51445400 SNP Detail

Summary

• ID
  rs51445400
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135765444 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    gctgaagga cagagcctgt ggtcctcaga
  catggaaagg ccagaatctg aagctaagct cttttatagg taaaatgact aaaacttcag
  agagcttaag tgaccagcct aaggccacac agtaaaagct gggcttaaaa ctcagacctt
  Y
  tgatccccca aagagtcatc ttctggcttc tgctgttttt ctTTATTGCC CATGAAAGGT
  GACCCCTGTG GCTTGTTGTG AGGGTGGTCA GATGGTAAGA AGGTGGTGAA AGCGCAGGGC
  CCTGGGGACA TGCTCCTAGT TACCCCTCCA                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss145548022	ENSMUSSNP3263339	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss319993839	CHEV_1_137734283	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs51445400					SNP	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135765444 () rs orientation: forward

Symbol	Name	Function Class
Rr419294	regulatory region 419294	1283 bp distal
Rr419295	regulatory region 419295	974 bp distal
Rr419296	regulatory region 419296	121 bp distal
Rr419297	regulatory region 419297	43 bp proximal
Tnnt2	troponin T2, cardiac	within coordinates
Tssr9005	transcription start site region 9005	1310 bp downstream
Tssr9006	transcription start site region 9006	704 bp upstream
Tssr9007	transcription start site region 9007	1201 bp upstream