rs51445823 SNP Detail

Summary

• ID
  rs51445823
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:63283647 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATTTCTCTC CTACCATGTG
  GATCCTAGGG ATCAAACTCA AGCAATAAGT ACCTTTATCA GCTGAGCCAT CTTGCCAGCT
  CTGCTCTTAG CTGTAAAGCA TGCTAAATTT TAATGTTTCC ATAAGTCATC TAAAGATCCT
  GCTGAAATGC AGATTCTGGT CCAACATTTG GGGGCTAGGG CTGGGGTTCT TCTATGATTG
  Y
  AAGCACCTGT GAGTTCAGAA CCTCCCCTCG ACATGTGTTC AAGCTCTCCA AAGACCCAAC
  TCATTTCTCC ATAAGTGTGT GATCGCCATT TCTTGCACAC ATTCTTGCAT TCTTGGCGTG
  GGGTACAGAC GCTGAGGAAG CCTCAGTGTG AGCAGTGTCC AGAAGGTAGG AAGGACACTC
  CCAAGGCTGC CTGCATCTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61818475	NES17756612	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51445823					SNP	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61818475	NES17756612	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:63283647 () rs orientation: forward

Symbol	Name	Function Class
Aopep	aminopeptidase O	within coordinates
Gm30409	predicted gene, 30409	1320 bp downstream
Rr273239	regulatory region 273239	954 bp proximal
Rr276922	regulatory region 276922	646 bp distal
Rr276923	regulatory region 276923	247 bp distal
Rr284650	regulatory region 284650	1847 bp distal
Rr284651	regulatory region 284651	1038 bp proximal