rs51446509 SNP Detail

Summary

• ID
  rs51446509
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:142202790 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGAG CAGGGGTGGG AAGAGACTGT
  W
  AGGAATTATT TTTTAGACTA CTTTA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
ss136014819	ENSMUSSNP5310495	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		A
ss321002356	CHEV_3_142159993	CHEVERUD	SCREENING_POP	f	SNP			A		T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
rs51446509					SNP	T	T	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:142202790 () rs orientation: forward

Symbol	Name	Function Class
Gbp5	guanylate binding protein 5	within coordinates
Rr398084	regulatory region 398084	228 bp downstream
Rr586446	regulatory region 586446	119 bp distal
Rr586447	regulatory region 586447	within coordinates
Rr586448	regulatory region 586448	1966 bp proximal
Tssr32047	transcription start site region 32047	240 bp downstream
Tssr32048	transcription start site region 32048	225 bp downstream
Tssr32049	transcription start site region 32049	199 bp downstream
Tssr32050	transcription start site region 32050	137 bp downstream
Tssr32051	transcription start site region 32051	90 bp downstream