rs51447563 SNP Detail

Summary

• ID
  rs51447563
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135776509 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGAGAAACC ACTTGTCATT
  TCCTACAAAG TTGAGACAGC CTCTAGTGGG CTTTCAGGTG GCTGTCCTTA CCTAGATGGG
  ATACTCTTCT GGAGGTTCCA TCTGCGATGG GCCACTTCCA TCTGCACCCA TGGGGCAGGC
  TGAGCACAAG CATTTGGAGG AGGGGCTACC TCTGGATTCC TGTACTGGAT TCCTACCATT
  R
  CTCATGGGCA CACACAGGAG TGTCTGCCTT TCTCCCTAGG AAAAGCGTCG GGCAGAGCGG
  GCCGAGCAGC AGCGTATTCG CAATGAGCGG GAGAAGGAAA GGCAGAACCG CCTGGCTGTG
  AGTGACCCTA GCCCGGCCAC TGAGCCCTCG GTCCCATATC TCTTCACAGA CATTGGTTCA
  AGTGGCAGCA TTTATCACAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss145548295	ENSMUSSNP1281732	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs51447563					SNP	G	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135776509 () rs orientation: forward

Symbol	Name	Function Class
Rr12644	regulatory region 12644	909 bp distal
Rr12645	regulatory region 12645	1892 bp proximal
Tnnt2	troponin T2, cardiac	within coordinates
Tssr225	transcription start site region 225	1031 bp downstream
Tssr226	transcription start site region 226	761 bp upstream
Tssr227	transcription start site region 227	669 bp downstream
Tssr9015	transcription start site region 9015	1035 bp downstream
Tssr9016	transcription start site region 9016	783 bp downstream
Tssr9017	transcription start site region 9017	745 bp downstream
Tssr9018	transcription start site region 9018	727 bp downstream
Tssr9019	transcription start site region 9019	694 bp downstream
Tssr9020	transcription start site region 9020	34 bp upstream
Tssr9021	transcription start site region 9021	86 bp upstream
Tssr9022	transcription start site region 9022	572 bp upstream
Tssr9023	transcription start site region 9023	591 bp upstream
Tssr9024	transcription start site region 9024	685 bp upstream
Tssr9025	transcription start site region 9025	974 bp upstream
Tssr9026	transcription start site region 9026	1176 bp upstream
Tssr9027	transcription start site region 9027	1286 bp upstream
Tssr9028	transcription start site region 9028	1326 bp upstream
Tssr9029	transcription start site region 9029	1906 bp upstream
Tssr9030	transcription start site region 9030	1941 bp upstream
Tssr9031	transcription start site region 9031	2000 bp upstream
Tssr13890	transcription start site region 13890	996 bp upstream
Tssr13891	transcription start site region 13891	751 bp upstream
Tssr13892	transcription start site region 13892	684 bp upstream
Tssr13893	transcription start site region 13893	667 bp upstream
Tssr13894	transcription start site region 13894	77 bp downstream
Tssr13895	transcription start site region 13895	87 bp downstream
Tssr13896	transcription start site region 13896	607 bp downstream
Tssr13897	transcription start site region 13897	678 bp downstream
Tssr13898	transcription start site region 13898	1966 bp downstream