rs51448602 SNP Detail

Summary

• ID
  rs51448602
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr19:7459288 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATATTTAATG CTAAGATCAG
  GAATATTGTG TCATAATTCA AGACTGCGCT GGAGTCAACA AAGCATTTTC TAAACCTCTT
  AAAATCCTTC CTTTGACAAA CCGAATTTTT CGCCAAAGAC TCAGTTCTCT TAAGAACCAC
  CACCTGCCAG TGGTGCATAT TTTTCCTCAA GAAGGCATCT GCACTGCAGA TCTCTCTGAT
  Y
  TGAGTCGAGC TTGCCAGTCA GCTCCCACCA GCAGGCAGAC TTGTATACAA AAGAAACTAA
  AGGAGGCCGC CAGCGTCCCT CCTAGTCTTT TCACACACAA GAGAGAAGGG GGTTCAAGCA
  GCCCAGGCTT TGTCTGAATT CTTTCCCCTG CAGCAATCGT TCCCTTTTGT TATGCTGCTA
  TTGAGAATAG GCCATCGAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss146020438	ENSMUSSNP3943818	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs51448602					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:7459288 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10559	CpG island 10559	569 bp proximal
Gm58988	predicted gene, 58988	within coordinates
Rr543685	regulatory region 543685	within coordinates
Rr543686	regulatory region 543686	1269 bp proximal
Rtn3	reticulon 3	Intron
Tssr5428	transcription start site region 5428	1058 bp downstream
Tssr5429	transcription start site region 5429	1136 bp downstream
Tssr5430	transcription start site region 5430	1229 bp downstream
Tssr5431	transcription start site region 5431	1365 bp downstream
Tssr157986	transcription start site region 157986	413 bp downstream
Tssr157987	transcription start site region 157987	1162 bp downstream
Tssr157988	transcription start site region 157988	1214 bp downstream
Tssr157989	transcription start site region 157989	1276 bp downstream
Tssr157990	transcription start site region 157990	1289 bp downstream
Tssr157991	transcription start site region 157991	1318 bp downstream