rs51448614 SNP Detail

Summary

• ID
  rs51448614
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:79392669 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGAGACACCG AGGTGGCTGA
  CACGCACAGT CCCTCCGGGT TCACAGGGAG GAGGGGCTCG GCTCGCAACT CCTCAGTGGG
  AGCTGGCCGC GGCCTCGTGC CTCGATTTAC CGGGCTGTGA CCTCTTTCTC CGAGAAGAAA
  CCCTGGGTCC TGAAGGGACG GGGGCGGAGG CCGACAGCAC CTGACTCACC TGAAAAGTCG
  R
  TCCCGGCCCT GGCTTTGGTT GGCGACTCGG ATGAAGGCGT CCATGGCTCC CACCCACAGC
  CACGCGTTGC GCCCGCTCCC TCGTGGGTCC CCTGGGACGT CGCCGGTCCC GGGGGACAGC
  GGGAACAGAT TAGTTGCCAG GTGGGTGGGA CTTCGTCTCT CCGCCCACAC GGGGGTGGGC
  ACACCTTCGG AAACGCGGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61025353	NES16102217	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51448614					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61025353	NES16102217	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:79392669 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi19314	CpG island 19314			within coordinates
Gm44706	predicted gene 44706			905 bp downstream
Pex11a	peroxisomal biogenesis factor 11 alpha			Coding-Synonymous
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr649701	regulatory region 649701			149 bp proximal
Rr649702	regulatory region 649702			253 bp proximal
Tssr67364	transcription start site region 67364			221 bp upstream
Tssr67365	transcription start site region 67365			249 bp upstream
Tssr73125	transcription start site region 73125			46 bp downstream
Tssr73126	transcription start site region 73126			64 bp downstream
Tssr73127	transcription start site region 73127			94 bp downstream
Tssr73128	transcription start site region 73128			113 bp downstream
Tssr73129	transcription start site region 73129			183 bp downstream
Wdr93	WD repeat domain 93			242 bp upstream