rs51450151 SNP Detail

Summary

• ID
  rs51450151
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:13013488 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGTGTTATG GGACGCTTGT
  AATGAAAGCA AGGTGACGTC ATTGGTCAGA TAGTGGTCCG ATTTGAAGAC TAGAGAAGCT
  TGGCGCGATG AGTGTCAGGA GCCAGGGAAA AGGTGAGCTT GGCTGCCAGA AGGGGCACGG
  ATGGGATAAG ACTGGAGATC TGCAGACACT TAGGGGAGGG TCAGGTCTTG TTGCTTAGTG
  Y
  ATATGGAGTT GAAGAGGCAG AGAAACTTGA ACAGGGAGGA CAGAGGGAAG TTGTCAGGGT
  GAGGATGGAC ATTTGGAAAG GGAAGCTGGC CTTTGGCATT TGGCAGCCAA GGAAGGCTTC
  AGATATAGCT TAGTGGTACA GTGTTTTCCT AGCAGCAACA GACCCTGCCT GGGTTCTATC
  TTCAGTAATA TAAAGGGGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60970711	NES16158026	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51450151					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60970711	NES16158026	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:13013488 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18339	CpG island 18339	218 bp distal
Lig1	ligase I, DNA, ATP-dependent	within coordinates
Rr400108	regulatory region 400108	620 bp downstream
Tssr64539	transcription start site region 64539	997 bp downstream
Tssr64540	transcription start site region 64540	688 bp downstream
Tssr64541	transcription start site region 64541	662 bp downstream
Tssr70659	transcription start site region 70659	854 bp upstream
Zswim9	zinc finger SWIM-type containing 9	841 bp upstream