rs51451277 SNP Detail

Summary

• ID
  rs51451277
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:89923218 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGACCAATGA CATCGATTAG
  TGAGGGGGAA AAGCACAGAA CTAAAAAGTG TATCACAGCC TTCTTTTCTA CACCTTGCTT
  CACTAGTTCA ACTTACAAAA CTAAAATATA AGCTGGAAGA AAGTACCAGC TTTGACTTTA
  AAACTAAAAT TTCATAGTTT AGGAAAGCTT TTCCTAGGCT TCTATAAACT TAACACCTTT
  Y
  CCTAAGTAAC CCTGGCAACC ATAAAGTAAT TCATCTGGAC ACCATTTTCA TAAAGACGCC
  CTGCTTCATA CCATTTTAAA GACTTATATT TAAGCATTTC CCAGGCTAAG AACAGACATA
  CTTATACCAG TTAAAGACAC AATTTTTTGT AGGAATTAAT CCAGGGCCTT ATGTCTGTTA
  GTGATGAACT CCATGACTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60423022	NES15924720	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51451277					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60423022	NES15924720	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:89923218 () rs orientation: forward

Symbol	Name	Function Class
Tssr34181	transcription start site region 34181	1479 bp upstream
Tssr34182	transcription start site region 34182	908 bp downstream
Tssr34183	transcription start site region 34183	1698 bp downstream
Ubap2l	ubiquitin-associated protein 2-like	within coordinates