rs51453539 SNP Detail

Summary

• ID
  rs51453539
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:30528872 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTAG GTGAACTCAA AATATCCTGG
  K
  AGAAATGTGT GTTTTTACAT TAAAA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	CAST/EiJ	LG/J	MOLF/EiJ	MSM/Ms	PWD/PhJ	SM/J	WSB/EiJ
ss52363822	NES15389155	PERLEGEN	MM_PANEL2	f	SNP			T		T		T		G
ss137553638	ENSMUSSNP352248	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G				T
ss323988642	CHEV_12_31163738	CHEVERUD	SCREENING_POP	f	SNP				G				G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	CAST/EiJ	LG/J	MOLF/EiJ	MSM/Ms	PWD/PhJ	SM/J	WSB/EiJ
rs51453539					SNP	G	G	T	G	T	T	T	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52363822	NES15389155	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:30528872 () rs orientation: forward

Symbol	Name	Function Class
Gm28806	predicted gene 28806	329 bp downstream
Tssr113087	transcription start site region 113087	190 bp upstream