rs51453867 SNP Detail

Summary

• ID
  rs51453867
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  128
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:40905388 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CGTGCCTTCA CGTGTCGGCG TCCTAGACGC GGTGAATACC
  GTGGAAAAGT TTCCGGGAAC TTGACACAGA GTAGAGGCGA GTCGGGACGA GCGGATTTGT
  R
  AGTGGAAGTC CGATTGGGCT GGCTCCTGAA GTGAGGTGGT GAAACGAAAG TCTCGAAAAG
  CTGCTAGGTA GATGTGGCTG TGAAGGCAGC TGGTATTAGG                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60400022	NES15889928	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	G	A	G	G	A	G	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51453867					SNP	A	A	A	G	A	G	G	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60400022	NES15889928	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:40905388 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13115	CpG island 13115	within coordinates
Gm64655	predicted gene, 64655	1428 bp upstream
Larp1b	La ribonucleoprotein 1B	within coordinates
Rr397652	regulatory region 397652	1140 bp downstream
Tssr28976	transcription start site region 28976	1139 bp downstream
Tssr28977	transcription start site region 28977	1101 bp downstream
Tssr28978	transcription start site region 28978	1013 bp downstream
Tssr28979	transcription start site region 28979	997 bp downstream
Tssr28980	transcription start site region 28980	985 bp downstream
Tssr28981	transcription start site region 28981	535 bp downstream
Tssr28982	transcription start site region 28982	296 bp downstream
Tssr28983	transcription start site region 28983	115 bp downstream