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rs51454756 SNP Detail
Summary
  • ID
    rs51454756
  • Variation Type
    SNP
  • Alleles
    A/T
Genome Location and Flanking Sequence
  • Location
    Chr12:52029656 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TGTGGGTTCT CTGGAGAAAT
    TAAATAGATC TAGTTTTCTT AATCTAATCA GCTATTTCTT TCTGTTGGTG TGCCATTAAA
    ATGTAAGGCC ATTTAAATGT AAGGTCATTT TTGAGGGGTG CTTGCTGATT CCTAAGATTT
    TGTTGGTGGC TGATGGGATT TTTTTTTTTT TTCCTTTGTT GGCTGGTTAC TGTGTTGAAC
    W
    CATGGATTTT TCTGTTCTCC TTTGTGAGTT TATTTACAGA AAGTTACTCT TTCCTGTGCT
    CTTGTGACTA AGAGCACAGG AAAGAGTGAT CTTTCGTCCT CCTTTAGGTA GTATTAACTG
    TGCTCTGCAG TACTGGTTTG GTGGTCACAA AATGTGTTAG CTTGTGGCTG CTTTGAAGTG
    TTCTTGTTTC TCCATCAATT                                            
    
    W = A/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss52429094 NES15398398 PERLEGEN MM_PANEL2 f SNP A T T T T T T T T A T T A T
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs51454756 SNP A T T T T T T T T A T T A T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss52429094 NES15398398 PERLEGEN MM_PANEL f SNP A/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr12:52029656 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Gm60186 predicted gene, 60186 1439 bp downstream
Rr387211 regulatory region 387211 420 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory