rs51454949 SNP Detail

Summary

• ID
  rs51454949
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:48662819 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTGCAATTC TTTGATGCTG
  TGTCTATAGA GTTCTCTGCA AAACTTTCCA GGTACCTTCA TGTAGCCAAG GGACACAACT
  TGGCAGTTCA GCGGGTTAGA GTGGGGTTTG TGAATCTTGT AAGTTAGAAC TTTTCCAAAC
  AGATGAAGTG GGTTTACTTC CTCAAGTCTC TTGAACCACA CCTCTTCTAC TTTGGCCTAG
  W
  ATCATAATTC ACAAGAAATT GCTAAACAGT ACATGTGGGT GGCCAAAATG TACTGAAAGT
  GCTTACTCCA CTGGGGTGTG TTTGTATGTG TTAAGGGTAC CTAGGTCAGC AATCCCATGG
  CGTATAAAAG CATCTCATCT GGCCAGGTCC TGGAACCTTT CCTGAGATTC TGGTGAGTCG
  GTCAGCTCTG TGGGACTCTC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss60458792	NES16437360	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs51454949					SNP	A	A	A	A	A	A	T	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60458792	NES16437360	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:48662819 () rs orientation: forward

Symbol	Name	Function Class
Retnla	resistin like alpha	153 bp upstream
Tssr138680	transcription start site region 138680	21 bp upstream
Tssr138681	transcription start site region 138681	75 bp upstream
Tssr138682	transcription start site region 138682	152 bp upstream
Tssr138683	transcription start site region 138683	198 bp upstream
Tssr138684	transcription start site region 138684	215 bp upstream
Tssr138685	transcription start site region 138685	263 bp upstream
Tssr138686	transcription start site region 138686	387 bp upstream
Tssr138687	transcription start site region 138687	428 bp upstream
Tssr138688	transcription start site region 138688	1087 bp upstream
Tssr138689	transcription start site region 138689	1715 bp upstream
Tssr138690	transcription start site region 138690	1773 bp upstream
Tssr138691	transcription start site region 138691	1810 bp upstream