rs51455298 SNP Detail

Summary

• ID
  rs51455298
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:124019212 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATGGATTA AAATATTCCC
  TTTTTTTAAC TATCTTGGTG GAAAGCCTTT GTTGTTTGTA TGTTCTCATA ATAAATATTC
  TAACTACTAG TTTTGTGTGA TATCCCCGAG GAAAACAGTG TGAACGGTGT GACACATGAC
  AGTAGACTAA TTATTTACAG CAGCTTCAAG GGAAGGTAAA GAATGTCATT TCTACACCTA
  S
  GAAAAATGGT GTAAATCCAT CAGCTTGCTT TACTTTAATA TCTTCTGTAA TGTTCAAAGT
  GCTGAACAAT AGCGGCTAGA GGTAGTTCAA AGAACCCTTC CACAGGGGTC ACATATCAGA
  CATCCTGAAC ATCAGGTATT TACATTATTA TTCATAACAG TACCAAAATT ACAGTTATGA
  GTTAACAAGG AGGATAATTT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60445855	NES15938728	PERLEGEN	MM_PANEL2	f	SNP	C		G	C	G	C	G	G	C	C	C		G	C	C	G		C
ss135782571	ENSMUSSNP6146646	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	G
ss320926400	CHEV_3_123928481	CHEVERUD	SCREENING_POP	f	SNP												C					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs51455298					SNP	C	C	G	C	G	C	G	G	C	C	C	C	G	C	C	G	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60445855	NES15938728	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:124019212 () rs orientation: forward

Symbol	Name	Function Class
Rr584579	regulatory region 584579	616 bp proximal