rs51455314 SNP Detail

Summary

• ID
  rs51455314
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:70990155 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGAGGAGAG GGGAGGGGAT
  AGAGGAGGGA GTAAAGCAGG GAGGAGGGGT ACCAGGAGGA GGAGGAGGAT AAGGGAGGAG
  TGGCAGGGAG AGGAGATGAA GCAGACTCAT GGTAAGTACT GGGCATCCTT CACGCCTATG
  ACCCAGCAGG AAGGTGTTTT GTCCACCTAC ATGAGAACTT GGGGTAGAGA CAAGGCCAGG
  R
  CACAGTCATA TCTAGCTGTT CACCCCTGTG CTTTTGTGGA AAACTGTCTT GGTGTGTTAC
  TCCAAAGTCC TCTGCCACCT GCCACCGCTG CAGCTCTGTG GGACTTCTCA CTTAAGGGCA
  AGATTGAGCT GCATAGAGAC AGGCATCCAG CATTCATTGT TCTCTAGTCC ATCCCCTGGT
  TACAGACCCT CTGGCCTTCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52651857	NES15472001	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51455314					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52651857	NES15472001	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:70990155 () rs orientation: forward

Symbol	Name	Function Class
Adamts16	ADAM metallopeptidase with thrombospondin type 1 motif 16	225 bp upstream
Cpgi5821	CpG island 5821	196 bp distal
Gm36529	predicted gene, 36529	within coordinates
Tssr123158	transcription start site region 123158	320 bp upstream
Tssr123159	transcription start site region 123159	282 bp upstream
Tssr123160	transcription start site region 123160	253 bp upstream
Tssr123161	transcription start site region 123161	226 bp upstream