rs51455860 SNP Detail

Summary

• ID
  rs51455860
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:16190208 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTATATGTA GGGAAGAAGC
  TGGGAAAGGA GGACTGTTTT AACAGAGGAC ACCTTAAAGA TACTTCTGCA CAATAAAAGA
  CAGAGAATGA AAAGGTGGTG GGAAGAATTT AAAAAAAAAA AAAGAAAGAA AAAGAAAGAA
  AAGCCTCAGA AAGAAATTGT TTTAAAGTGC ACACTGGTCT TGTTCTGTGA ATACTGTAAT
  Y
  CTCAATGAAC TCAGCTCTGC TGGTACTTTG AGGAGAAATG ACCCAGCCAG GCAGCCCTGC
  CGTGGATGCT ACACTATGGT CAAGGCTGAC AAGGGGAGGT GGGCAAGTAG AAGAACAAAA
  TGAGAGTAGT TCATGCCAGG GGAAAAGAAT TTGCCAATAT ATTTAGAGAT TCGTGCCCTC
  CAGACCAGTT ACTCACATCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52620149	NES15517505	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	C	C	C	T	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51455860					SNP	C	C	T	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52620149	NES15517505	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:16190208 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5296	CpG island 5296	1701 bp proximal
Inhba	inhibin beta-A	within coordinates
Tssr118431	transcription start site region 118431	1215 bp downstream
Tssr118432	transcription start site region 118432	1184 bp downstream
Tssr118433	transcription start site region 118433	1171 bp downstream
Tssr118434	transcription start site region 118434	1150 bp downstream
Tssr118435	transcription start site region 118435	705 bp upstream
Tssr118436	transcription start site region 118436	1061 bp upstream
Tssr118437	transcription start site region 118437	1301 bp upstream
Tssr118438	transcription start site region 118438	1424 bp upstream
Tssr118439	transcription start site region 118439	1441 bp upstream
Tssr118440	transcription start site region 118440	1660 bp upstream
Tssr118441	transcription start site region 118441	1750 bp upstream
Tssr118442	transcription start site region 118442	1996 bp upstream